Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

9 proteins
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Showing 9 of 9 matching proteins
Unreviewed
Other enzyme / miscellaneous
Organism
Escherichia coli
UniProt ID
Q0P7K8
Related PDBs
7mtt
InterPro family
IPR012550: Protein of unknown function DUF1706
InterPro domains
—
Matched classes
Other enzyme / miscellaneous [duf, protein of unknown function]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8V2
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8T7
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0CE47
Related PDBs
8fr3
InterPro family
IPR004541: Translation elongation factor EFTu/EF1A, bacterial/organelle; IPR050055: Elongation factor Tu GTPase
InterPro domains
IPR000795: Translational (tr)-type GTP-binding domain; IPR004160: Translation elongation factor EFTu/EF1A, C-terminal; IPR004161: Translation elongation factor EFTu-like, domain 2; IPR005225: Small GTP-binding domain; IPR033720: Elongation factor Tu, domain 2; IPR041709: Elongation factor Tu (EF-Tu), GTP-binding domain
Matched classes
Translation / ribosomal protein [ef-tu, ef1a, eftu, elongation factor, initiation factor, translation elongation] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside]
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Reviewed
Transcription factor / transcription regulator
Organism
Escherichia coli (strain K12)
UniProt ID
P00579
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR028630: RNA polymerase sigma factor RpoD; IPR050239: Sigma-70 factor family, RNA polymerase initiation factors
InterPro domains
IPR000943: RNA polymerase sigma-70; IPR007127: RNA polymerase sigma factor 70, region 1.1; IPR007624: RNA polymerase sigma-70 region 3; IPR007627: RNA polymerase sigma-70 region 2; IPR007630: RNA polymerase sigma-70 region 4; IPR007631: RNA polymerase sigma factor 70, non-essential domain; IPR009042: RNA polymerase sigma-70 region 1.2; IPR012760: RNA polymerase sigma factor RpoD, C-terminal; IPR014284: RNA polymerase sigma-70-like domain
Matched classes
DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Translation / ribosomal protein [initiation factor] || Transcription factor / transcription regulator [rna polymerase initiation factor, rpod, sigma factor, sigma-70]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A6X3
Related PDBs
3qo3,3res,6qlb
InterPro family
IPR005001: RNA-binding protein Hfq
InterPro domains
IPR047575: Sm domain
Matched classes
RNA-binding / RNA metabolism protein [hfq, rna-binding]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P10121
Related PDBs
6cs8,6cvd,6dlx
InterPro family
IPR004390: Signal-recognition particle receptor FtsY
InterPro domains
IPR000897: Signal recognition particle, SRP54 subunit, GTPase domain; IPR003593: AAA+ ATPase domain; IPR013822: Signal recognition particle SRP54, helical bundle
Matched classes
Translation / ribosomal protein [ftsy, signal-recognition particle, srp receptor] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A7R5
Related PDBs
3d3b
InterPro family
IPR001848: Small ribosomal subunit protein uS10
InterPro domains
IPR027486: Small ribosomal subunit protein uS10 domain
Matched classes
Translation / ribosomal protein [ribosomal]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0AG30
Related PDBs
9ff7
InterPro family
IPR004665: Transcription termination factor Rho
InterPro domains
IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR003593: AAA+ ATPase domain; IPR011112: Rho termination factor-like, N-terminal; IPR011113: Rho termination factor, RNA-binding domain; IPR011129: Cold-shock domain; IPR041703: Transcription termination factor Rho, ATP binding domain
Matched classes
RNA-binding / RNA metabolism protein [rho, rna-binding, transcription termination factor] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside, nucleotide]
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