Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

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Showing 12 of 36 matching proteins
Reviewed
DNA/RNA modification or nucleotide metabolism enzyme
Organism
Homo sapiens
UniProt ID
Q9C0B1
Related PDBs
4qkn,4zs3,5dab
InterPro family
IPR032868: Alpha-ketoglutarate-dependent dioxygenase FTO
InterPro domains
IPR024366: Alpha-ketoglutarate-dependent dioxygenase FTO, C-terminal; IPR024367: Alpha-ketoglutarate-dependent dioxygenase FTO, catalytic domain
Matched classes
DNA/RNA modification or nucleotide metabolism enzyme [dioxygenase, fto]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q96LI5
Related PDBs
3ngq
InterPro family
IPR050410: CCR4/nocturin mRNA turnover and transcription
InterPro domains
IPR005135: Endonuclease/exonuclease/phosphatase; IPR034967: CCR4-NOT transcription complex subunit 6-like
Matched classes
Nuclease / DNA-RNA repair enzyme [endonuclease, exonuclease, nuclease] || RNA-binding / RNA metabolism protein [ccr4, mrna turnover, nocturin, rna turnover]
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Reviewed
Transcription factor / transcription regulator
Organism
Homo sapiens
UniProt ID
P04637
Related PDBs
7b47,7b48,7b4b,8rbb
InterPro family
IPR002117: p53 tumour suppressor family
InterPro domains
IPR010991: p53, tetramerisation domain; IPR011615: p53, DNA-binding domain; IPR013872: p53, transactivation domain; IPR040926: Cellular tumor antigen p53, transactivation domain 2
Matched classes
Transcription factor / transcription regulator [p53, transcription factor, tumour suppressor]
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Unreviewed
Other enzyme / miscellaneous
Organism
Escherichia coli
UniProt ID
Q0P7K8
Related PDBs
7mtt
InterPro family
IPR012550: Protein of unknown function DUF1706
InterPro domains
—
Matched classes
Other enzyme / miscellaneous [duf, protein of unknown function]
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Unreviewed
CRISPR-Cas / prokaryotic antiviral defense protein
Organism
Thermococcus onnurineus (strain NA1)
UniProt ID
B6YWC3
Related PDBs
6o6y,6o6z,6o70
InterPro family
IPR010171: CRISPR system endoribonuclease Csx1; IPR052875: CRISPR-associated endoribonuclease
InterPro domains
IPR053857: CRISPR system endoribonuclease Csx1-like, CARF domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [crispr, csx1, endoribonuclease csx1] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease]
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Unreviewed
Nuclease / DNA-RNA repair enzyme
Organism
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
UniProt ID
Q8PYK9
Related PDBs
7vji,7vjb,7vjh,7vj7,7vje,7vja,7vjj,7vjk,7vjg
InterPro family
IPR008148: DNA photolyase class 2; IPR052219: DNA Photolyase Class-2
InterPro domains
IPR006050: DNA photolyase, N-terminal
Matched classes
Nuclease / DNA-RNA repair enzyme [photolyase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus aquaticus
UniProt ID
P19821
Related PDBs
5ktq
InterPro family
IPR002298: DNA polymerase A; IPR018320: DNA polymerase 1
InterPro domains
IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR002421: 5'-3' exonuclease; IPR003583: Helix-hairpin-helix DNA-binding motif, class 1; IPR015361: Taq polymerase, thermostable, exonuclease region; IPR020045: DNA polymerase I-like, H3TH domain; IPR020046: 5'-3' exonuclease, alpha-helical arch, N-terminal
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Homo sapiens
UniProt ID
O75417
Related PDBs
9osy
InterPro family
IPR002298: DNA polymerase A
InterPro domains
IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR001650: Helicase, C-terminal domain-like; IPR011545: DEAD/DEAH-box helicase domain; IPR014001: Helicase superfamily 1/2, ATP-binding domain; IPR046931: DNA polymerase theta-like, helix-turn-helix domain; IPR048960: POLQ-like, helical domain; IPR057220: Domain of unknown function DUF7898
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside] || Other enzyme / miscellaneous [duf]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia phage RB69
UniProt ID
Q38087
Related PDBs
1ih7,1waf,1waj,3cfo,4i9l,7f4y
InterPro family
IPR006172: DNA-directed DNA polymerase, family B; IPR034749: DNA-directed DNA polymerase T4 type; IPR050240: DNA polymerase type-B
InterPro domains
IPR006133: DNA-directed DNA polymerase, family B, exonuclease domain; IPR006134: DNA-directed DNA polymerase, family B, multifunctional domain
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8V2
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE9
Related PDBs
1zyr,2a6h
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8T7
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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