Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

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Showing 12 of 43 matching proteins
Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
Q05823
Related PDBs
1wdy,4g8l
InterPro family
—
InterPro domains
IPR000719: Protein kinase domain; IPR010513: KEN domain; IPR042745: RNase L, RNase domain
Matched classes
Nuclease / DNA-RNA repair enzyme [rnase] || Other enzyme / miscellaneous [kinase]
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Reviewed
tRNA-related enzyme
Organism
Aquifex aeolicus (strain VF5)
UniProt ID
O66728
Related PDBs
4wc0,4wc1
InterPro family
IPR052390: tRNA Nucleotidyltransferase/Poly(A) Polymerase
InterPro domains
IPR000644: CBS domain; IPR002646: Poly A polymerase, head domain; IPR003156: DHHA1 domain
Matched classes
DNA/RNA polymerase and replication protein [nucleotidyltransferase, poly(a) polymerase, polymerase] || tRNA-related enzyme [trna, trna nucleotidyltransferase]
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Unreviewed
DNA/RNA modification or nucleotide metabolism enzyme
Organism
Limisphaera ngatamarikiensis
UniProt ID
A0A6M1RED6
Related PDBs
8z3r
InterPro family
IPR006330: Adenosine/adenine deaminase
InterPro domains
IPR001365: Adenosine deaminase domain
Matched classes
DNA/RNA modification or nucleotide metabolism enzyme [adenine deaminase, adenosine, deaminase]
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Reviewed
tRNA-related enzyme
Organism
Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
UniProt ID
O28126
Related PDBs
1r8c,1r89,1r8b,1ueu
InterPro family
IPR008229: tRNA nucleotidyltransferase, archaea
InterPro domains
IPR002934: Polymerase, nucleotidyl transferase domain; IPR006116: 2-5OAS/ClassI-CCAase, nucleotidyltransferase domain; IPR015329: tRNA nucleotidyltransferase, substrate binding; IPR048833: CCA-adding enzyme, C-terminal domain
Matched classes
DNA/RNA polymerase and replication protein [nucleotidyltransferase, polymerase] || tRNA-related enzyme [trna, trna nucleotidyltransferase]
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Unreviewed
RNA-binding / RNA metabolism protein
Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
UniProt ID
Q38DE2
Related PDBs
7c4b,7c47,7c4c
InterPro family
IPR052144: piRNA biogenesis EXD1-related protein
InterPro domains
IPR001878: Zinc finger, CCHC-type; IPR002562: 3'-5' exonuclease domain
Matched classes
Argonaute / RNAi-related protein [exd1, pirna] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease] || RNA-binding / RNA metabolism protein [pirna biogenesis]
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Unreviewed
CRISPR-Cas / prokaryotic antiviral defense protein
Organism
Thermococcus onnurineus (strain NA1)
UniProt ID
B6YWC3
Related PDBs
6o6y,6o6z,6o70
InterPro family
IPR010171: CRISPR system endoribonuclease Csx1; IPR052875: CRISPR-associated endoribonuclease
InterPro domains
IPR053857: CRISPR system endoribonuclease Csx1-like, CARF domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [crispr, csx1, endoribonuclease csx1] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease]
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Reviewed
CRISPR-Cas / prokaryotic antiviral defense protein
Organism
Thermococcus onnurineus (strain NA1)
UniProt ID
B6YWB8
Related PDBs
6kc0,6iqw,6o74,6o7d,6o7e
InterPro family
IPR013408: CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1; IPR052117: CRISPR-associated Cas10/Csm1 subtype III-A protein
InterPro domains
IPR000160: GGDEF domain; IPR006674: HD domain; IPR041062: Csm1, subunit domain B; IPR054767: Cas10/Cmr2, second palm domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas , cas10, cmr, crispr, csm, csm1] || Nuclease / DNA-RNA repair enzyme [deoxyribonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA modification or nucleotide metabolism enzyme
Organism
Homo sapiens
UniProt ID
Q9Y3Z3
Related PDBs
4q7h,4rxo,4mz7,4rxs,4qfz,4qg1,4qg2,4qg4,4qg0,4rxp,4rxq,4tnr,4rxr,4bzb,4bzc,4to0,4tnz,4to4,4tnp,4to1,4qfy,4tnq,4qfx,4tnx,4to6,4to5,5ao2,5ao3,5ao0,5ao4,4tny,4zwg,4to3,4to2,5ao1,4zwe,6cm2,6dwj,6dw7,6dw3,6dwd,6dw5,6dwk,6dw4,6txf,6tx0,6txa,6txe,6txc,6yom,6xu1,7a5y,7lu5,7ltt,7s2y,8gb1,7ujn,8qxj,8qxk,8qxl,8qxo,8qxm,8qxn,9ec2
InterPro family
IPR050135: Deoxyguanosinetriphosphate triphosphohydrolase-like
InterPro domains
IPR001660: Sterile alpha motif domain; IPR003607: HD/PDEase domain; IPR006674: HD domain
Matched classes
DNA/RNA modification or nucleotide metabolism enzyme [deoxyguanosinetriphosphate, triphosphohydrolase]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0CE47
Related PDBs
8fr3
InterPro family
IPR004541: Translation elongation factor EFTu/EF1A, bacterial/organelle; IPR050055: Elongation factor Tu GTPase
InterPro domains
IPR000795: Translational (tr)-type GTP-binding domain; IPR004160: Translation elongation factor EFTu/EF1A, C-terminal; IPR004161: Translation elongation factor EFTu-like, domain 2; IPR005225: Small GTP-binding domain; IPR033720: Elongation factor Tu, domain 2; IPR041709: Elongation factor Tu (EF-Tu), GTP-binding domain
Matched classes
Translation / ribosomal protein [ef-tu, ef1a, eftu, elongation factor, initiation factor, translation elongation] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
UniProt ID
Q9UXC2
Related PDBs
2c37
InterPro family
IPR011807: Exosome complex component Rrp41; IPR050080: Ribonuclease PH
InterPro domains
IPR001247: Exoribonuclease, phosphorolytic domain 1; IPR015847: Exoribonuclease, phosphorolytic domain 2
Matched classes
Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease, ribonuclease ph, rnase, rrp41] || Translation / ribosomal protein [ribosomal]
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Reviewed
Other enzyme / miscellaneous
Organism
Bos taurus
UniProt ID
P21146
Related PDBs
3pvu,5he0,5he3,8jpb,8jpd,8jpc
InterPro family
IPR000239: GPCR kinase
InterPro domains
IPR000719: Protein kinase domain; IPR000961: AGC-kinase, C-terminal; IPR001849: Pleckstrin homology domain; IPR016137: RGS domain
Matched classes
Other enzyme / miscellaneous [gpcr kinase, kinase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q8TEQ6
Related PDBs
5h1m,5h3t,5tef,5tha
InterPro family
IPR052640: Gem-associated protein 5
InterPro domains
IPR056420: Gem-associated protein 5, RBS domain; IPR056421: Gem-associated protein 5, TPR domain; IPR056424: Gem-associated protein 5, second beta-propeller domain; IPR056432: Gem-associated protein 5, first beta-propeller
Matched classes
RNA-binding / RNA metabolism protein [gem-associated]
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