Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

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Showing 12 of 36 matching proteins
Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
Q9UQ84
Related PDBs
9seb,9smo
InterPro family
IPR006084: XPG/Rad2 endonuclease
InterPro domains
IPR006085: XPG, N-terminal; IPR006086: XPG-I domain; IPR037315: Exonuclease-1, H3TH domain; IPR044752: Exonuclease 1-like, PIN-like domain
Matched classes
Nuclease / DNA-RNA repair enzyme [endonuclease, exonuclease, nuclease, rad2, xpg]
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
P39748
Related PDBs
9rci,9rdi
InterPro family
IPR006084: XPG/Rad2 endonuclease; IPR023426: Flap endonuclease 1
InterPro domains
IPR006085: XPG, N-terminal; IPR006086: XPG-I domain
Matched classes
Nuclease / DNA-RNA repair enzyme [endonuclease, exonuclease, flap endonuclease, nuclease, rad2, xpg]
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Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
UniProt ID
P03366
Related PDBs
3isn,8dxg,8dx2
InterPro family
—
InterPro domains
IPR000071: Immunodeficiency lentiviral matrix, N-terminal; IPR000477: Reverse transcriptase domain; IPR001037: Integrase, C-terminal, retroviral; IPR001584: Integrase, catalytic core; IPR001878: Zinc finger, CCHC-type; IPR001995: Peptidase A2A, retrovirus, catalytic; IPR002156: Ribonuclease H domain; IPR003308: Integrase, N-terminal zinc-binding domain; IPR010659: Reverse transcriptase connection; IPR010661: Reverse transcriptase thumb; IPR018061: Retropepsins; IPR034170: Retropepsin-like catalytic domain; IPR045345: Retroviral nucleocapsid Gag protein p24, C-terminal domain
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || Other enzyme / miscellaneous [peptidase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
P09651
Related PDBs
9f4g,9f4h,9f4n,9f4s,9f4u,9f4k,9f4o,9f50,9f4j,9f4q,9f4p,9f4w,9f53,9f5f,9f5e,9f4z,9f5d,9f4d,9f4x,9f4y,9hql,9hq9
InterPro family
—
InterPro domains
IPR000504: RNA recognition motif domain; IPR021662: Heterogeneous nuclear ribonucleoprotein A1/A2, C-terminal; IPR034516: hnRNP A1/3, RNA recognition motif 2; IPR034845: hnRNP A1, RNA recognition motif 1
Matched classes
RNA-binding / RNA metabolism protein [rna-binding] || DNA/RNA modification or nucleotide metabolism enzyme [nucleotide]
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Unreviewed
Transcription factor / transcription regulator
Organism
Drosophila melanogaster
UniProt ID
Q9VAA9
Related PDBs
6kcu
InterPro family
—
InterPro domains
IPR000313: PWWP domain; IPR021567: Lens epithelium-derived growth factor, integrase-binding domain
Matched classes
Transcription factor / transcription regulator
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Unreviewed
Transcription factor / transcription regulator
Organism
Staphylococcus aureus
UniProt ID
Q5Y812
Related PDBs
5ffz
InterPro family
—
InterPro domains
IPR000835: MarR-type HTH domain
Matched classes
Transcription factor / transcription regulator
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
O15527
Related PDBs
6rlw,7ayy
InterPro family
IPR004577: 8-oxoguanine DNA-glycosylase; IPR052054: Oxidative DNA damage repair enzyme
InterPro domains
IPR003265: HhH-GPD domain; IPR012904: 8-oxoguanine DNA glycosylase, N-terminal
Matched classes
Nuclease / DNA-RNA repair enzyme [8-oxoguanine, dna repair, dna-glycosylase, glycosylase, oxidative dna damage]
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Reviewed
Transcription factor / transcription regulator
Organism
Homo sapiens
UniProt ID
P19838
Related PDBs
8tqd
InterPro family
IPR000451: NF-kappa-B/Dorsal
InterPro domains
IPR000488: Death domain; IPR002909: IPT domain; IPR011539: Rel homology domain, DNA-binding domain; IPR030503: Nuclear factor NF-kappa-B, p105 subunit, Rel homology domain, N-terminal; IPR032397: Rel homology dimerisation domain; IPR033926: NFkappaB IPT domain; IPR047096: Nuclear factor NF-kappa-B p105 subunit, death domain
Matched classes
Transcription factor / transcription regulator [dorsal, nf-kappa-b, p53, transcription factor]
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Unreviewed
Viral replication / viral nucleic-acid-related protein
Organism
Influenza A virus
UniProt ID
C6H0Y9
Related PDBs
6v53,6v6x,6vl3,6wij,7kop,7k77,7kaf,7umr,7uuh,8dvo,8dip
InterPro family
IPR001009: Influenza RNA-dependent RNA polymerase subunit PA
InterPro domains
—
Matched classes
Viral replication / viral nucleic-acid-related protein [influenza, rna-dependent rna polymerase] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase, rna-dependent rna polymerase] || Nuclease / DNA-RNA repair enzyme [endonuclease, nuclease]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
UniProt ID
Q5JFX3
Related PDBs
9ld3,9ldh,9ldi
InterPro family
IPR002745: Phosphotransferase KptA/Tpt1; IPR022928: RNA 2'-phosphotransferase KptA, putative
InterPro domains
—
Matched classes
RNA-binding / RNA metabolism protein [rna 2'-phosphotransferase]
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Unreviewed
Viral replication / viral nucleic-acid-related protein
Organism
human metapneumovirus
UniProt ID
Q8QN58
Related PDBs
4cs9
InterPro family
IPR009452: Pneumovirus matrix 2-1
InterPro domains
IPR000571: Zinc finger, CCCH-type
Matched classes
Viral replication / viral nucleic-acid-related protein [matrix 2-1, pneumovirus]
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Reviewed
Other enzyme / miscellaneous
Organism
Homo sapiens
UniProt ID
P00734
Related PDBs
2h9t,2gp9,3bf6,3dd2,3u8r,3u69,4rko,5e8e
InterPro family
IPR001314: Peptidase S1A, chymotrypsin family; IPR003966: Prothrombin/thrombin; IPR051659: Serine Protease S1 Domain-Containing Protein
InterPro domains
IPR000001: Kringle; IPR000294: Gamma-carboxyglutamic acid-rich (GLA) domain; IPR001254: Serine proteases, trypsin domain; IPR018992: Thrombin light chain
Matched classes
Other enzyme / miscellaneous [chymotrypsin, peptidase, prothrombin, serine protease, thrombin]
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