Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

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Showing 9 of 9 matching proteins
Reviewed
DNA/RNA polymerase and replication protein
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt ID
P08518
Related PDBs
1twa,1twh,1twg,1twc,1twf
InterPro family
IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR007646: RNA polymerase Rpb2, domain 4; IPR007647: RNA polymerase Rpb2, domain 5
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8V2
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE9
Related PDBs
1zyr,2a6h
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8T7
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE8
Related PDBs
1zyr,2a6h
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4; IPR048566: DNA-directed RNA polymerase subunit beta', hybrid domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
UniProt ID
P03366
Related PDBs
3isn,8dxg,8dx2
InterPro family
—
InterPro domains
IPR000071: Immunodeficiency lentiviral matrix, N-terminal; IPR000477: Reverse transcriptase domain; IPR001037: Integrase, C-terminal, retroviral; IPR001584: Integrase, catalytic core; IPR001878: Zinc finger, CCHC-type; IPR001995: Peptidase A2A, retrovirus, catalytic; IPR002156: Ribonuclease H domain; IPR003308: Integrase, N-terminal zinc-binding domain; IPR010659: Reverse transcriptase connection; IPR010661: Reverse transcriptase thumb; IPR018061: Retropepsins; IPR034170: Retropepsin-like catalytic domain; IPR045345: Retroviral nucleocapsid Gag protein p24, C-terminal domain
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || Other enzyme / miscellaneous [peptidase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Enterobacteria phage T4
UniProt ID
P32277
Related PDBs
1s68
InterPro family
IPR012647: RNA ligase, Rnl2; IPR044263: RNA ligase 2, viral
InterPro domains
IPR021122: RNA ligase domain, REL/Rln2; IPR040609: RNA ligase 2, C-terminal
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || RNA-binding / RNA metabolism protein [rna ligase]
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Reviewed
Transcription factor / transcription regulator
Organism
Escherichia coli (strain K12)
UniProt ID
P00579
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR028630: RNA polymerase sigma factor RpoD; IPR050239: Sigma-70 factor family, RNA polymerase initiation factors
InterPro domains
IPR000943: RNA polymerase sigma-70; IPR007127: RNA polymerase sigma factor 70, region 1.1; IPR007624: RNA polymerase sigma-70 region 3; IPR007627: RNA polymerase sigma-70 region 2; IPR007630: RNA polymerase sigma-70 region 4; IPR007631: RNA polymerase sigma factor 70, non-essential domain; IPR009042: RNA polymerase sigma-70 region 1.2; IPR012760: RNA polymerase sigma factor RpoD, C-terminal; IPR014284: RNA polymerase sigma-70-like domain
Matched classes
DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Translation / ribosomal protein [initiation factor] || Transcription factor / transcription regulator [rna polymerase initiation factor, rpod, sigma factor, sigma-70]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0AG30
Related PDBs
9ff7
InterPro family
IPR004665: Transcription termination factor Rho
InterPro domains
IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR003593: AAA+ ATPase domain; IPR011112: Rho termination factor-like, N-terminal; IPR011113: Rho termination factor, RNA-binding domain; IPR011129: Cold-shock domain; IPR041703: Transcription termination factor Rho, ATP binding domain
Matched classes
RNA-binding / RNA metabolism protein [rho, rna-binding, transcription termination factor] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside, nucleotide]
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